3 Terminology

We adopt the following logic for parameter names:
1. species
2. area (A = In for within the park, Out for outside the park) 3. parameter name (survival, reproduction etc.)
4. age index (1 = first year (birth to one year after birth), 2 second year, … , 2+ or 2plus includes the second and all following years)
5. time (year)

We follow the terminology given in Thomson et al. (2009) for survival parameters: \(S\) for true survival, \(\phi\) for apparent survival, i.e. the product of site fidelity and survival.

in text in code description
\(^{wolfA}S_{1,t}\) wolfInS1, wolfOutS1 annual survival of a wolf from birth to first summer
\(^{wolfA}S_{2,t}\) wolfInS2, wolfOutS2 annual survival of a wolf from first to second summer
\(^{wolfA}S_{3+,t}\) wolfInS3plus, wolfOutS3plus annual survival of a wolf from second summer onward
\(^{wolfA}f_t\) wolfInf, wolfOutf average number of puppies produced per female in one year
\(^{wolfA}N_{1,t}\) wolfInN1,wolfOutfN1 number of first year wolves just before reproduction inside or outside of the park
\(^{wolfA}N_{2,t}\) wolfInN2, wolfOutN2 number of second year wolves just before reproduction inside or outside of the park
\(^{wolfA}N_{3+,t}\) wolfInN3plus, wolfOutN3plus number of older wolves just before reproduction inside or outside of the park
\(^{wolfA}P_t\) wolfInP, wolfOutP number of wolf packs inside or outside of the park
\(^{wolfA}F_t\) wolfInFplus, wolfOutFplus number of reproducing female wolves inside or outside of the park
\(^{deerA}N_{1,t}\) deerInN1, deerOutN1 number of yearlings of deer inside and outside of the park
\(^{deerA}N_{2,t}\) deerInN2, deerOutN2 number of second year individuals of deer inside and outside of the park
\(^{deerA}N_{3,t}\) deerInN3, deerOutN3 number of third year and older individuals of deer inside and outside of the park
\(^{deerA}S_{1,t}\) deerInS1, deerOutS1 survival of a deer from birth to first summer
\(^{deerA}S_{2,t}\) deerInS2, deerOutS2 survival of a deer from first to second summer
\(^{deerA}S_{3+,t}\) deerInS3plus, deerOutS3plus survival of a deer from second summer onward
\(^{deerA}f_{t}\) deerInf, deerOutf average number of young produced per female in one year
\(^{chamoisA}S_{1,t}\) chamoisInS1, chamoisOutS1 survival of a chamois from birth to first summer
\(^{chamoisA}S_{2,t}\) chamoisInS2, chamoisOutS2 survival of a chamois from first to second summer
\(^{chamoisA}S_{3+,t}\) chamoisInS3plus, chamoisOutS3plus survival of a chamois from second summer onward
\(^{chamoisA}f_{t}\) chamoisInf, chamoisOutf average number of young produced per female in one year
TT <- 100 # number of years to run the model
nsim <- 50 # number of Monte Carlo iterations

References

Thomson, D L, M J Conroy, D R Anderson, K P Burnham, E G Cooch, C M Francis, J.-D. Lebreton, et al. 2009. “Standardising Terminology and Notation for the Analysis of Demographic Processes in Marked Populations.” In Modeling Demographic Processes in Marked Populations, edited by D L Thomson, E G Cooch, and M J Conroy, 1099–1106. Berlin: Springer.